SNP Report
Basic Info
| Name | rs7900949 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 10:85832447 - 85832447(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | T | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.216254 | ||
| Annotation | intron_variant; NMD_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000536331, ENST00000464741, ENST00000327946); NMD_transcript_variant(ENST00000464741) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000536331, ENST00000464741, ENST00000327946) | ||
| PolyPhen Annotation | probably_damaging | ||
| PolyPhen Variant Effect | probably_damaging(ENST00000536331, ENST00000464741, ENST00000327946) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GRID1 | glutamate receptor, ionotropic, delta 1 | 10q22 | Mapped by Literature SNP, Mapped by LD-proxy |
SNPs in LD with rs7900949 (count: 0)
SNP related eQTL (count: 1)