SNP Report
Basic Info
| Name | rs6969903 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 7:17438834 - 17438834(+) | ||
| Variant Seq | C,G | ||
| Ancestral Allele | T | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.043131 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000439046, ENST00000419463, ENST00000454003); non_coding_transcript_variant(ENST00000439046, ENST00000419463, ENST00000454003) | ||
| SIFT Annotation | deleterious_-_low_confidence | ||
| SIFT Variant Effect | deleterious_-_low_confidence(ENST00000463496, ENST00000242057) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000463496, ENST00000242057) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Xie, P.,2013 | Lifetime PTSD | Whole Cohort of African Americans: in GWAS,P-value=1.11E-05,...... Whole Cohort of African Americans: in GWAS,P-value=1.11E-05,in replication,P-value=NT,in combined, P-value=NT More... | No significant signals were observed in the African American...... No significant signals were observed in the African American part of the sample. More... | Trend |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| AHR | aryl hydrocarbon receptor | 7p15 | 1(0/0/1) |
SNPs in LD with rs6969903 (count: 4)
Literature-origin SNPs (count: 0)
LD-proxies (count: 4)
SNP related eQTL (count: 1)