SNP Report
Name | rs6969903 dbSNP Ensembl | ||
---|---|---|---|
Location | 7:17438834 - 17438834(+) | ||
Variant Seq | C,G | ||
Ancestral Allele | T | ||
Ref Seq | T | ||
Minor Allele Frequence | 0.043131 | ||
Annotation | intron_variant; non_coding_transcript_variant | ||
Variant Effect | intron_variant(ENST00000439046, ENST00000419463, ENST00000454003); non_coding_transcript_variant(ENST00000439046, ENST00000419463, ENST00000454003) | ||
SIFT Annotation | deleterious_-_low_confidence | ||
SIFT Variant Effect | deleterious_-_low_confidence(ENST00000463496, ENST00000242057) | ||
PolyPhen Annotation | possibly_damaging | ||
PolyPhen Variant Effect | possibly_damaging(ENST00000463496, ENST00000242057) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription;Enhancers | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.