PTSDgene database

SNP Report

Basic Info
Name rs3093068 dbSNP Ensembl
Location 1:159711574 - 159711574(+)
Variant Seq C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.14996
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000473196, ENST00000368110, ENST00000489317, ENST00000368111, ENST00000368112, ENST00000255030, ENST00000437342)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000255030)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000255030)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Active TSS;Weak transcription
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Michopoulos, V.,2015 PTSD symptoms T=-2.31, P-value=0.02 T=-2.31, P-value=0.02 No significant effect on PTSD symptoms. No significant effect on PTSD symptoms. Non-significant

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CRP C-reactive protein, pentraxin-related 1q23.2 3(2/1/0)

SNPs in LD with rs3093068 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx