SNP Report
Basic Info
| Name | rs2779551 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 9:98490944 - 98490944(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | T | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.0924521 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000259455, ENST00000634919, ENST00000634227, ENST00000477471); non_coding_transcript_variant(ENST00000634919, ENST00000634227, ENST00000477471) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000259455) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000259455) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Enhancers;Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Xie, P.,2013 | Lifetime PTSD | Whole Cohort of European Americans: in GWAS,P-value=5.36E-06...... Whole Cohort of European Americans: in GWAS,P-value=5.36E-06,in replication,P-value=0.28,in combined, P-value=0.019 More... | No significant signals was observed about this SNP. No significant signals was observed about this SNP. | Trend |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GABBR2 | gamma-aminobutyric acid (GABA) B receptor, 2 | 9q22.1-q22.3 | 1(0/0/1) |
SNPs in LD with rs2779551 (count: 1)
Literature-origin SNPs (count: 0)
LD-proxies (count: 1)
SNP related eQTL (count: 1)