PTSDgene database

SNP Report

Basic Info
Name rs2779551 dbSNP Ensembl
Location 9:98490944 - 98490944(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.0924521
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000259455, ENST00000634919, ENST00000634227, ENST00000477471); non_coding_transcript_variant(ENST00000634919, ENST00000634227, ENST00000477471)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000259455)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000259455)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers;Weak transcription
No. of Marker's Association Results 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Xie, P.,2013 Lifetime PTSD Whole Cohort of European Americans: in GWAS,P-value=5.36E-06...... Whole Cohort of European Americans: in GWAS,P-value=5.36E-06,in replication,P-value=0.28,in combined, P-value=0.019 More... No significant signals was observed about this SNP. No significant signals was observed about this SNP. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2 9q22.1-q22.3 1(0/0/1)

SNPs in LD with rs2779551 (count: 1)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx