PTSDgene database

SNP Report

Basic Info
Name rs2808559 dbSNP Ensembl
Location 9:98491884 - 98491884(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.105232
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000634227, ENST00000259455, ENST00000477471, ENST00000634919); non_coding_transcript_variant(ENST00000634227, ENST00000477471, ENST00000634919)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000259455)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000259455)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GABBR2 gamma-aminobutyric acid (GABA) B receptor, 2 9q22.1-q22.3 1(0/0/1)

SNPs in LD with rs2808559 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx