SNP Report
Basic Info
| Name | rs208679 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 11:34432514 - 34432514(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | A | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.138778 | ||
| Annotation | downstream_gene_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000405137) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000435224) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000435224) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Weak transcription;Enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Duan, Z. X.,2014 | PTSD diagnosis | Codominant effect: P-value=0.38; Dominant effect: P-value=...... Codominant effect: P-value=0.38; Dominant effect: P-value=0.29; Recessive effect: P-value=0.26 More... | We found that none of six tag SNPs of the CAT gene were sign...... We found that none of six tag SNPs of the CAT gene were significantly associated with the risk of PTSD in all alternative analysis model. More... | Non-significant |
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| CAT | catalase | 11p13 | 1(1/0/0) |
| CIR1P3 | corepressor interacting with RBPJ, 1 pseudogene 3 | 11p13 | Mapped by Literature SNP, Mapped by LD-proxy, rSNP target |
SNPs in LD with rs208679 (count: 23)
Literature-origin SNPs (count: 0)
LD-proxies (count: 23)
SNP related eQTL (count: 1)