SNP Report
Basic Info
| Name | rs1800479 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 2:21004511 - 21004511(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.124401 | ||
| Annotation | upstream_gene_variant; intron_variant | ||
| Variant Effect | upstream_gene_variant(ENST00000567376); intron_variant(ENST00000616098, ENST00000233242) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000233242) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000233242) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | TF binding region | ||
| Chromatin State | Weak transcription;Strong transcription;ZNF genes & repeats;Genic enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Duan, Z.,2015 | PTSD diagnosis | Allele dose analysis model: P-value=0.46; Dominant effect: ...... Allele dose analysis model: P-value=0.46; Dominant effect: P-value=0.42; Recessive effect: P-value=0.32. More... | No significant results. No significant results. | Non-significant |
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| APOB | apolipoprotein B | 2p24-p23 | 1(0/0/1) |
| DRD2 | dopamine receptor D2 | 11q23.2 | 18(11/7/0) |
SNPs in LD with rs1800479 (count: 10)
Literature-origin SNPs (count: 0)
LD-proxies (count: 10)
SNP related eQTL (count: 1)