SNP Report
Name | rs16942660 dbSNP Ensembl | ||
---|---|---|---|
Location | 15:60508867 - 60508867(+) | ||
Variant Seq | T | ||
Ancestral Allele | C | ||
Ref Seq | C | ||
Minor Allele Frequence | 0.0341454 | ||
Annotation | downstream_gene_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant | ||
Variant Effect | downstream_gene_variant(ENST00000559343, ENST00000551975, ENST00000560004); upstream_gene_variant(ENST00000559902); intron_variant(ENST00000501579, ENST00000558235, ENST00000335670, ENST00000261523, ENST00000449337, ENST00000309157, ENST00000558140, ENST00000559587, ENST00000559824); non_coding_transcript_variant(ENST00000501579, ENST00000558235, ENST00000558140, ENST00000559587, ENST00000559824) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000309157, ENST00000335670, ENST00000449337, ENST00000261523) | ||
PolyPhen Annotation | benign; possibly_damaging | ||
PolyPhen Variant Effect | benign(ENST00000335670, ENST00000261523); possibly_damaging(ENST00000309157, ENST00000449337) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | TF binding region;Chromatin interactive region | ||
Chromatin State | Weak transcription;Enhancers;Strong transcription;Genic enhancers | ||
No. of Marker's Association Results | 2 (Positive: 1; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.