SNP Report
Basic Info
| Name | rs1611133 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 6:29841605 - 29841605(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.166134 | ||
| Annotation | downstream_gene_variant | ||
| SIFT Annotation | deleterious_-_low_confidence; tolerated | ||
| SIFT Variant Effect | deleterious_-_low_confidence(ENST00000376815, ENST00000376828, ENST00000428701, ENST00000360323); tolerated(ENST00000376818, ENST00000478519) | ||
| PolyPhen Annotation | benign; probably_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000376815, ENST00000376828); probably_damaging(ENST00000376818, ENST00000428701, ENST00000360323, ENST00000478519) | ||
| rSNP? | No Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Inactive region | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Guffanti, G.,2013 | PTSD | In the DNHS subjects: B=4.47, P-value=1.18E-06, OR=3.56, 95...... In the DNHS subjects: B=4.47, P-value=1.18E-06, OR=3.56, 95%CI=2.04-6.22. More... | The next strongest signals were at SNP rs1611133. The next strongest signals were at SNP rs1611133. | Trend |
SNP related genes (count: 0)
SNPs in LD with rs1611133 (count: 6)
Literature-origin SNPs (count: 0)
LD-proxies (count: 6)
SNP related eQTL (count: 1)