SNP Report
Basic Info
| Name | rs1610702 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 6:29813744 - 29813744(+) | ||
| Variant Seq | C,T | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.164537 | ||
| Annotation | upstream_gene_variant | ||
| Variant Effect | upstream_gene_variant(ENST00000416822) | ||
| SIFT Annotation | tolerated_-_low_confidence | ||
| SIFT Variant Effect | tolerated_-_low_confidence(ENST00000444621, ENST00000259951) | ||
| PolyPhen Annotation | unknown | ||
| PolyPhen Variant Effect | unknown(ENST00000475996) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | TF binding region;Chromatin interactive region | ||
| Chromatin State | Enhancers;Weak transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 3)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| MICG | MHC class I polypeptide-related sequence G (pseudogene) | 6p21.3 | Mapped by LD-proxy |
| HCG4P11 | HLA complex group 4 pseudogene 11 | 6p21.3 | rSNP target |
| HLA-F | major histocompatibility complex, class I, F | 6p21.3 | rSNP target |
SNPs in LD with rs1610702 (count: 0)
SNP related eQTL (count: 1)