SNP Report
Name | rs12357206 dbSNP Ensembl | ||
---|---|---|---|
Location | 10:60030625 - 60030625(+) | ||
Variant Seq | A | ||
Ancestral Allele | G | ||
Ref Seq | G | ||
Minor Allele Frequence | 0.273562 | ||
Annotation | intron_variant; non_coding_transcript_variant | ||
Variant Effect | intron_variant(ENST00000502769, ENST00000373820, ENST00000503366, ENST00000612776, ENST00000373827, ENST00000489505, ENST00000280772, ENST00000618374, ENST00000480699, ENST00000355288); non_coding_transcript_variant(ENST00000489505, ENST00000480699) | ||
SIFT Annotation | deleterious_-_low_confidence | ||
SIFT Variant Effect | deleterious_-_low_confidence(ENST00000280772, ENST00000616444, ENST00000502769, ENST00000373820, ENST00000355288, ENST00000610321, ENST00000503366, ENST00000617800, ENST00000612776, ENST00000373827) | ||
PolyPhen Annotation | unknown; benign; possibly_damaging; probably_damaging | ||
PolyPhen Variant Effect | unknown(ENST00000616444); benign(ENST00000503366); possibly_damaging(ENST00000355288); probably_damaging(ENST00000280772, ENST00000502769, ENST00000373820, ENST00000610321, ENST00000617800, ENST00000612776, ENST00000373827) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | Chromatin interactive region | ||
Chromatin State | Weak transcription;Enhancers | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.