SNP Report
Name | rs1049862 dbSNP Ensembl | ||
---|---|---|---|
Location | 10:60029514 - 60029514(+) | ||
Variant Seq | A | ||
Ancestral Allele | G | ||
Ref Seq | G | ||
Minor Allele Frequence | 0.280152 | ||
Annotation | downstream_gene_variant; 3_prime_UTR_variant | ||
Variant Effect | downstream_gene_variant(ENST00000489505, ENST00000480699, ENST00000503366, ENST00000618374, ENST00000355288, ENST00000502769, ENST00000612776); 3_prime_UTR_variant(ENST00000373827, ENST00000373820, ENST00000280772) | ||
SIFT Annotation | tolerated_-_low_confidence | ||
SIFT Variant Effect | tolerated_-_low_confidence(ENST00000263102) | ||
PolyPhen Annotation | benign | ||
PolyPhen Variant Effect | benign(ENST00000263102) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription;Enhancers;Flanking Active TSS | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.