SNP Report
Basic Info
| Name | rs1205 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 1:159712443 - 159712443(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.338259 | ||
| Annotation | downstream_gene_variant; non_coding_transcript_exon_variant; 3_prime_UTR_variant; non_coding_transcript_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000368110, ENST00000489317, ENST00000368111); non_coding_transcript_exon_variant(ENST00000473196); 3_prime_UTR_variant(ENST00000437342, ENST00000368112, ENST00000255030); non_coding_transcript_variant(ENST00000473196) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000255030) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000255030) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Active TSS;Enhancers;ZNF genes & repeats | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Michopoulos, V.,2015 | PTSD symptoms | T=-0.11, P-value=0.91 T=-0.11, P-value=0.91 | No significant effect on PTSD symptoms. No significant effect on PTSD symptoms. | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| CRP | C-reactive protein, pentraxin-related | 1q23.2 | 3(2/1/0) |
SNPs in LD with rs1205 (count: 12)
Literature-origin SNPs (count: 0)
LD-proxies (count: 12)
SNP related eQTL (count: 1)