SNP Report
Name | rs10457838 dbSNP Ensembl | ||
---|---|---|---|
Location | 6:149036411 - 149036411(+) | ||
Variant Seq | T | ||
Ancestral Allele | C | ||
Ref Seq | C | ||
Minor Allele Frequence | 0.228235 | ||
Annotation | upstream_gene_variant; intron_variant | ||
Variant Effect | upstream_gene_variant(ENST00000433442); intron_variant(ENST00000367463) | ||
SIFT Annotation | deleterious | ||
SIFT Variant Effect | deleterious(ENST00000367463) | ||
PolyPhen Annotation | possibly_damaging | ||
PolyPhen Variant Effect | possibly_damaging(ENST00000367463) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | Chromatin interactive region | ||
Chromatin State | Weak transcription;Enhancers | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.