SNP Report

Basic Info
Name |
rs9804190
dbSNP
Ensembl
|
Location |
10:60080073 - 60080073(+) |
Variant Seq |
T |
Ancestral Allele |
T |
Ref Seq |
C |
Minor Allele Frequence |
0.257788 |
Annotation |
downstream_gene_variant; upstream_gene_variant; intron_variant
|
Variant Effect |
downstream_gene_variant(ENST00000508449, ENST00000622427); upstream_gene_variant(ENST00000365320); intron_variant(ENST00000280772, ENST00000503366, ENST00000511043, ENST00000616444, ENST00000373820, ENST00000373827, ENST00000618374, ENST00000355288, ENST00000610321)
|
SIFT Annotation |
deleterious_-_low_confidence
|
SIFT Variant Effect |
deleterious_-_low_confidence(ENST00000610321, ENST00000280772)
|
PolyPhen Annotation |
benign; possibly_damaging
|
PolyPhen Variant Effect |
benign(ENST00000610321); possibly_damaging(ENST00000280772)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Weak transcription;Strong transcription
|
No. of Marker's Association Results |
1 (Positive: 1; Negative: 0; Trend: 0) |
Source |
Literature |

SNP related association results

SNP related genes (count: 1)

SNPs in LD with rs9804190 (count: 0)

SNP related eQTL (count: 1)