PTSDgene database

SNP Report

Basic Info
Name rs9804190 dbSNP Ensembl
Location 10:60080073 - 60080073(+)
Variant Seq T
Ancestral Allele T
Ref Seq C
Minor Allele Frequence 0.257788
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant
Variant Effect downstream_gene_variant(ENST00000508449, ENST00000622427); upstream_gene_variant(ENST00000365320); intron_variant(ENST00000280772, ENST00000503366, ENST00000511043, ENST00000616444, ENST00000373820, ENST00000373827, ENST00000618374, ENST00000355288, ENST00000610321)
SIFT Annotation deleterious_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000610321, ENST00000280772)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000610321); possibly_damaging(ENST00000280772)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Logue, M. W.,2013 PTSD OR=0.71, P-value=0.042, corrected P-value=0.93 OR=0.71, P-value=0.042, corrected P-value=0.93 The bipolar disorder-associated SNP rs9804190 was the only S...... The bipolar disorder-associated SNP rs9804190 was the only SNPin ANK3 that was nominally significantly associated (P-value< 0.05) with both PTSD and externalizing. More... Significant

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 10q21 2(2/0/0)

SNPs in LD with rs9804190 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx