SNP Report
Basic Info
| Name | rs9538394 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 13:59354287 - 59354287(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | T | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.457069 | ||
| Annotation | downstream_gene_variant | ||
| SIFT Annotation | deleterious_-_low_confidence | ||
| SIFT Variant Effect | deleterious_-_low_confidence(ENST00000612954, ENST00000377918) | ||
| PolyPhen Annotation | possibly_damaging; probably_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000377918); probably_damaging(ENST00000612954) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Active TSS;Enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Xie, P.,2013 | Lifetime PTSD | Trauma Exposed European Americans: in GWAS,P-value=9.12E-06,...... Trauma Exposed European Americans: in GWAS,P-value=9.12E-06,in replication,P-value=NT,in combined, P-value=NT. More... | No significant signals was observed about this SNP. Genome-w...... No significant signals was observed about this SNP. Genome-wide association study analyses restricted to trauma-exposed individuals yielded very similar results. More... | Trend |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| DIAPH3 | diaphanous related formin 3 | 13q21.2 | 1(0/0/1) |
SNPs in LD with rs9538394 (count: 1)
Literature-origin SNPs (count: 0)
LD-proxies (count: 1)
SNP related eQTL (count: 1)