SNP Report
Basic Info
| Name | rs9534507 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 13:46887599 - 46887599(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | A | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.0405351 | ||
| Annotation | intron_variant | ||
| Variant Effect | intron_variant(ENST00000378688, ENST00000542664, ENST00000543956) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000542664, ENST00000543956, ENST00000378688) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000542664, ENST00000543956, ENST00000378688) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Strong transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Solovieff, N.,2014 | PTSD severity | P-value=0.027 P-value=0.027 | Achieved nominal levels of significance with PTSD severity, ...... Achieved nominal levels of significance with PTSD severity, although was not significant after correction for multiple testing More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| HTR2A | 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled | 13q14-q21 | 4(2/2/0) |
SNPs in LD with rs9534507 (count: 15)
Literature-origin SNPs (count: 0)
LD-proxies (count: 15)
SNP related eQTL (count: 1)