PTSDgene database

SNP Report

Basic Info
Name rs806376 dbSNP Ensembl
Location 6:88148929 - 88148929(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.449681
Annotation upstream_gene_variant; intron_variant
Variant Effect upstream_gene_variant(ENST00000468898, ENST00000362094, ENST00000549890); intron_variant(ENST00000428600, ENST00000369499, ENST00000369501, ENST00000551417)
SIFT Annotation deleterious_-_low_confidence; tolerated_-_low_confidence; deleterious
SIFT Variant Effect deleterious_-_low_confidence(ENST00000362094, ENST00000468898); tolerated_-_low_confidence(ENST00000549890, ENST00000369501, ENST00000428600, ENST00000369499); deleterious(ENST00000551417)
PolyPhen Annotation benign; probably_damaging
PolyPhen Variant Effect benign(ENST00000551417, ENST00000549890, ENST00000369501, ENST00000428600, ENST00000369499); probably_damaging(ENST00000362094, ENST00000468898)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CNR1 cannabinoid receptor 1 (brain) 6q14-q15 2(0/2/0)

SNPs in LD with rs806376 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx