PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs806376 dbSNP Ensembl
Location	6:88148929 - 88148929(+)
Variant Seq	C
Ancestral Allele	T
Ref Seq	T
Minor Allele Frequence	0.449681
Annotation	upstream_gene_variant; intron_variant
Variant Effect	upstream_gene_variant(ENST00000468898, ENST00000362094, ENST00000549890); intron_variant(ENST00000428600, ENST00000369499, ENST00000369501, ENST00000551417)
SIFT Annotation	deleterious_-_low_confidence; tolerated_-_low_confidence; deleterious
SIFT Variant Effect	deleterious_-_low_confidence(ENST00000362094, ENST00000468898); tolerated_-_low_confidence(ENST00000549890, ENST00000369501, ENST00000428600, ENST00000369499); deleterious(ENST00000551417)
PolyPhen Annotation	benign; probably_damaging
PolyPhen Variant Effect	benign(ENST00000551417, ENST00000549890, ENST00000369501, ENST00000428600, ENST00000369499); probably_damaging(ENST00000362094, ENST00000468898)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
CNR1	cannabinoid receptor 1 (brain)	6q14-q15	2(0/2/0)

SNPs in LD with rs806376 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1	Yes	Adipose Subcutaneous	cis	GTEx