PTSDgene database

SNP Report

Basic Info
Name rs7555240 dbSNP Ensembl
Location 1:46417631 - 46417631(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.288339
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000243167, ENST00000484697)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000243167)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000243167)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
FAAH fatty acid amide hydrolase 1p35-p34 8(3/5/0)

SNPs in LD with rs7555240 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx