PTSDgene database

SNP Report

Basic Info
Name rs6787134 dbSNP Ensembl
Location 3:114183902 - 114183902(+)
Variant Seq G
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.114617
Annotation upstream_gene_variant; intron_variant
Variant Effect upstream_gene_variant(ENST00000295881, ENST00000383673); intron_variant(ENST00000460779)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000295881, ENST00000383673, ENST00000467632, ENST00000460779)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000295881, ENST00000383673, ENST00000467632, ENST00000460779)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Nelson, E. C.,2014 PTSD P-value=0.0088, OR=0.80 P-value=0.0088, OR=0.80 Although the association of this SNP is of considerably lowe...... Although the association of this SNP is of considerably lower magnitude, it is interesting to note. More... Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD3 dopamine receptor D3 3q13.3 2(1/1/0)

SNPs in LD with rs6787134 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx