PTSDgene database

SNP Report

Basic Info
Name rs660652 dbSNP Ensembl
Location 15:78595490 - 78595490(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.256989
Annotation downstream_gene_variant; upstream_gene_variant; 3_prime_UTR_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000624172, ENST00000559554, ENST00000299565, ENST00000559576, ENST00000394802); upstream_gene_variant(ENST00000567141); 3_prime_UTR_variant(ENST00000326828); intron_variant(ENST00000348639, ENST00000559002, ENST00000559658); NMD_transcript_variant(ENST00000559658); non_coding_transcript_variant(ENST00000559002)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000559658, ENST00000326828, ENST00000348639)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000559658, ENST00000326828, ENST00000348639)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CHRNA3 cholinergic receptor, nicotinic alpha 3 15q24 1(0/1/0)
CHRNA5 cholinergic receptor, nicotinic alpha 5 15q24 2(1/1/0)

SNPs in LD with rs660652 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx