PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs660652 dbSNP Ensembl
Location	15:78595490 - 78595490(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	A
Minor Allele Frequence	0.256989
Annotation	downstream_gene_variant; upstream_gene_variant; 3_prime_UTR_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000624172, ENST00000559554, ENST00000299565, ENST00000559576, ENST00000394802); upstream_gene_variant(ENST00000567141); 3_prime_UTR_variant(ENST00000326828); intron_variant(ENST00000348639, ENST00000559002, ENST00000559658); NMD_transcript_variant(ENST00000559658); non_coding_transcript_variant(ENST00000559002)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000559658, ENST00000326828, ENST00000348639)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000559658, ENST00000326828, ENST00000348639)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Weak transcription;Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
CHRNA3	cholinergic receptor, nicotinic alpha 3	15q24	1(0/1/0)
CHRNA5	cholinergic receptor, nicotinic alpha 5	15q24	2(1/1/0)

SNPs in LD with rs660652 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-259G18.3	No	Adipose Subcutaneous	cis	GTEx