PTSDgene database

SNP Report

Basic Info
Name rs6495307 dbSNP Ensembl
Location 15:78597979 - 78597979(+)
Variant Seq T
Ancestral Allele T
Ref Seq C
Minor Allele Frequence 0.309904
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect downstream_gene_variant(ENST00000624172, ENST00000558903, ENST00000559554, ENST00000299565, ENST00000559576, ENST00000394802); upstream_gene_variant(ENST00000559002); intron_variant(ENST00000326828, ENST00000559658, ENST00000348639); NMD_transcript_variant(ENST00000559658)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000348639, ENST00000559658, ENST00000326828)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000348639, ENST00000559658, ENST00000326828)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CHRNA3 cholinergic receptor, nicotinic alpha 3 15q24 1(0/1/0)
CHRNA5 cholinergic receptor, nicotinic alpha 5 15q24 2(1/1/0)

SNPs in LD with rs6495307 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx