SNP Report

Basic Info
Name |
rs6495307
dbSNP
Ensembl
|
Location |
15:78597979 - 78597979(+) |
Variant Seq |
T |
Ancestral Allele |
T |
Ref Seq |
C |
Minor Allele Frequence |
0.309904 |
Annotation |
downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant
|
Variant Effect |
downstream_gene_variant(ENST00000624172, ENST00000558903, ENST00000559554, ENST00000299565, ENST00000559576, ENST00000394802); upstream_gene_variant(ENST00000559002); intron_variant(ENST00000326828, ENST00000559658, ENST00000348639); NMD_transcript_variant(ENST00000559658)
|
SIFT Annotation |
deleterious
|
SIFT Variant Effect |
deleterious(ENST00000348639, ENST00000559658, ENST00000326828)
|
PolyPhen Annotation |
probably_damaging
|
PolyPhen Variant Effect |
probably_damaging(ENST00000348639, ENST00000559658, ENST00000326828)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
TF binding region;Chromatin interactive region
|
Chromatin State |
Weak transcription;Strong transcription
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 2)

SNPs in LD with rs6495307 (count: 0)

SNP related eQTL (count: 1)