SNP Report
Basic Info
| Name | rs647041 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 15:78588139 - 78588139(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | C | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.276358 | ||
| Annotation | downstream_gene_variant; upstream_gene_variant; intron_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000559658, ENST00000559002, ENST00000567141, ENST00000348639); upstream_gene_variant(ENST00000559576); intron_variant(ENST00000299565, ENST00000559554, ENST00000394802) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000394802, ENST00000559554, ENST00000299565) | ||
| PolyPhen Annotation | benign; possibly_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000394802); possibly_damaging(ENST00000559554, ENST00000299565) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| CHRNA3 | cholinergic receptor, nicotinic alpha 3 | 15q24 | 1(0/1/0) |
| CHRNA5 | cholinergic receptor, nicotinic alpha 5 | 15q24 | 2(1/1/0) |
SNPs in LD with rs647041 (count: 0)
SNP related eQTL (count: 1)