PTSDgene database

SNP Report

Basic Info
Name rs6429600 dbSNP Ensembl
Location 1:46398839 - 46398839(+)
Variant Seq A
Ancestral Allele A
Ref Seq G
Minor Allele Frequence 0.294529
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000493735, ENST00000468718, ENST00000243167); non_coding_transcript_variant(ENST00000493735, ENST00000468718)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000243167)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000243167)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers;Bivalent Enhancer
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
FAAH fatty acid amide hydrolase 1p35-p34 8(3/5/0)

SNPs in LD with rs6429600 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx