SNP Report
Name | rs6295 dbSNP Ensembl | ||
---|---|---|---|
Location | 5:63962738 - 63962738(+) | ||
Variant Seq | G | ||
Ancestral Allele | G | ||
Ref Seq | C | ||
Minor Allele Frequence | 0.453275 | ||
Annotation | upstream_gene_variant; intron_variant; non_coding_transcript_variant | ||
Variant Effect | upstream_gene_variant(ENST00000323865, ENST00000506598); intron_variant(ENST00000502882); non_coding_transcript_variant(ENST00000502882) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000323865) | ||
PolyPhen Annotation | benign | ||
PolyPhen Variant Effect | benign(ENST00000323865) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | TF binding region | ||
Chromatin State | Bivalent/Poised TSS;Active TSS;Flanking Bivalent TSS/Enh;Bivalent Enhancer | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.