PTSDgene database

SNP Report

Basic Info
Name rs61938733 dbSNP Ensembl
Location 12:117349366 - 117349366(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.0155751
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000618760, ENST00000549189, ENST00000317775, ENST00000477584); non_coding_transcript_variant(ENST00000549189, ENST00000477584)
SIFT Annotation deleterious_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000317775, ENST00000338101, ENST00000618760, ENST00000344089)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000317775, ENST00000338101, ENST00000618760, ENST00000344089)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Bruenig, D.,2017(b) CAPS score ANOVA: P-value>0.05 ANOVA: P-value>0.05 This SNP was not associated with PTSD severity. This SNP was not associated with PTSD severity. Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
NOS1 nitric oxide synthase 1 12q24.22 1(1/0/0)

SNPs in LD with rs61938733 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx