SNP Report

Basic Info

Name	rs6080131 dbSNP Ensembl
Location	20:16125395 - 16125395(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	A
Minor Allele Frequence	0.441693
Annotation	downstream_gene_variant
SIFT Annotation	deleterious_-_low_confidence; deleterious
SIFT Variant Effect	deleterious_-_low_confidence(ENST00000407045); deleterious(ENST00000378058, ENST00000402914)
PolyPhen Annotation	possibly_damaging; probably_damaging
PolyPhen Variant Effect	possibly_damaging(ENST00000407045); probably_damaging(ENST00000378058, ENST00000402914)
rSNP?	No Link in rVarBase
Related Regulatory Elements	N.A.
Chromatin State	N.A.
No. of Marker's Association Results	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature

SNP related association results

Normal genetic study related association results (count: 1)

Reference	Phenotype	Statistical Values	Author Comments	Marker's Category
Almli, L. M.,2015	PTSD Symptoms as measured by the quantitave CAPS scores	In (SBPBC cohort) discovery stage: (sex and top three princ...... In (SBPBC cohort) discovery stage: (sex and top three principal components as covariates) B (SE)=18.95 (3.85), P-value=3.48E-06. More...	None None	Trend

SNP related genes (count: 0)

SNPs in LD with rs6080131 (count: 29)

The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 1)

rs_ID	Annotation	No. of Association Results(Positive/Negative/Trend)	r²[population]

rs4239715		1(0/0/1)	0.8170[EUR]

LD-proxies (count: 28)

rs_ID	Literature-origin SNPs with LD	Annotation	r²[population]
rs4814437	rs4239715 rs6080131	downstream_gene_variant	0.8170[EUR]
rs1885943	rs6080131	downstream_gene_variant	0.8353[EUR]
rs6110924	rs4239715 rs6080131	downstream_gene_variant	0.8170[EUR]
rs6080148	rs4239715 rs6080131	downstream_gene_variant	0.8064[EUR]
rs1407824	rs4239715 rs6080131	downstream_gene_variant	0.8873[EUR]
rs17726942	rs4239715 rs6080131	downstream_gene_variant	0.9101[EUR]
rs2327989	rs4239715 rs6080131	downstream_gene_variant	0.8170[EUR]
rs6075018	rs4239715 rs6080131	downstream_gene_variant	0.9261[EUR]
rs4239716	rs4239715 rs6080131	downstream_gene_variant	0.8170[EUR]
rs1535597	rs6080131	downstream_gene_variant	0.8767[EUR]
rs4142099	rs4239715 rs6080131	downstream_gene_variant	0.9261[EUR]
rs1885942	rs6080131	downstream_gene_variant	0.8302[EUR]
rs4813212	rs4239715 rs6080131	downstream_gene_variant	0.9091[EUR]
rs6080134	rs4239715 rs6080131	downstream_gene_variant	0.9261[EUR]
rs6075015	rs4239715 rs6080131	downstream_gene_variant	0.9093[EUR]
rs6110922	rs4239715 rs6080131	downstream_gene_variant	0.8011[EUR]
rs6110905	rs6080131	downstream_gene_variant	0.8330[EUR]
rs1323302	rs4239715 rs6080131	downstream_gene_variant	0.9259[EUR]
rs6080144	rs4239715 rs6080131	downstream_gene_variant	0.8929[EUR]
rs6080128	rs6080131	downstream_gene_variant	0.8767[EUR]
rs4814439	rs4239715 rs6080131	downstream_gene_variant	0.8170[EUR]
rs6080147	rs4239715 rs6080131	downstream_gene_variant	0.8170[EUR]
rs4814440	rs4239715 rs6080131	downstream_gene_variant	0.8170[EUR]
rs6075017	rs4239715 rs6080131	downstream_gene_variant	0.9205[EUR]
rs6075014	rs4239715 rs6080131	downstream_gene_variant	0.8932[EUR]
rs6080143	rs4239715 rs6080131	downstream_gene_variant	0.9259[EUR]
rs6043753	rs4239715 rs6080131	downstream_gene_variant	0.9431[EUR]
rs6075019	rs4239715 rs6080131	downstream_gene_variant	0.9261[EUR]

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP5-1109J22.1	No	Adipose Subcutaneous	cis	GTEx