PTSDgene database

SNP Report

Basic Info
Name rs4142099 dbSNP Ensembl
Location 20:16141621 - 16141621(+)
Variant Seq A
Ancestral Allele A
Ref Seq G
Minor Allele Frequence 0.473442
Annotation downstream_gene_variant
SIFT Annotation deleterious_-_low_confidence; deleterious
SIFT Variant Effect deleterious_-_low_confidence(ENST00000407045); deleterious(ENST00000378058, ENST00000402914)
PolyPhen Annotation possibly_damaging; probably_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000407045); probably_damaging(ENST00000378058, ENST00000402914)
rSNP? No Link in rVarBase
Related Regulatory Elements N.A.
Chromatin State N.A.
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs4142099 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx