PTSDgene database

SNP Report

Basic Info
Name rs59920126 dbSNP Ensembl
Location 17:66480419 - 66480419(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.171126
Annotation intron_variant; NMD_transcript_variant
Variant Effect intron_variant(ENST00000578063, ENST00000284384, ENST00000413366); NMD_transcript_variant(ENST00000578063, ENST00000284384)
SIFT Annotation tolerated_-_low_confidence; tolerated
SIFT Variant Effect tolerated_-_low_confidence(ENST00000284384); tolerated(ENST00000578063, ENST00000413366)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000578063, ENST00000413366, ENST00000284384)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers;Flanking Active TSS
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
PRKCA protein kinase C, alpha 17q24.2 10(9/0/1)

SNPs in LD with rs59920126 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx