PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs58428316 dbSNP Ensembl
Location	6:15648444 - 15648444(+)
Variant Seq	A
Ancestral Allele	G
Ref Seq	G
Minor Allele Frequence	0.104633
Annotation	intron_variant; NMD_transcript_variant
Variant Effect	intron_variant(ENST00000355917, ENST00000622898, ENST00000515875, ENST00000338950, ENST00000510395, ENST00000506844, LRG_588t2, ENST00000344537, ENST00000513680, LRG_588t1, ENST00000511762); NMD_transcript_variant(ENST00000515875, ENST00000510395, ENST00000506844, ENST00000513680)
SIFT Annotation	deleterious_-_low_confidence; deleterious
SIFT Variant Effect	deleterious_-_low_confidence(ENST00000510395); deleterious(ENST00000515875, ENST00000344537, ENST00000355917, LRG_588t2, ENST00000338950, LRG_588t1)
PolyPhen Annotation	probably_damaging
PolyPhen Variant Effect	probably_damaging(ENST00000515875, ENST00000510395, ENST00000344537, ENST00000355917, LRG_588t2, ENST00000338950, LRG_588t1)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;ZNF genes & repeats;Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
DTNBP1	dystrobrevin binding protein 1	6p22.3	5(2/3/0)

SNPs in LD with rs58428316 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1	Yes	Adipose Subcutaneous	cis	GTEx