SNP Report
Basic Info
| Name | rs58365910 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 15:78556692 - 78556692(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | T | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.220048 | ||
| Annotation | downstream_gene_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000044462) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000560217, ENST00000413382, ENST00000044462, ENST00000559082) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000560217, ENST00000413382, ENST00000044462, ENST00000559082) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| PSMA4 | proteasome subunit alpha 4 | 15q24.1 | Mapped by LD-proxy, rSNP target |
| CHRNA5 | cholinergic receptor, nicotinic alpha 5 | 15q24 | 2(1/1/0) |
SNPs in LD with rs58365910 (count: 0)
SNP related eQTL (count: 1)