PTSDgene database

SNP Report

Basic Info
Name rs57178647 dbSNP Ensembl
Location 17:66473971 - 66473971(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.168331
Annotation intron_variant; NMD_transcript_variant
Variant Effect intron_variant(ENST00000413366, ENST00000284384, ENST00000578063); NMD_transcript_variant(ENST00000284384, ENST00000578063)
SIFT Annotation tolerated_-_low_confidence; tolerated
SIFT Variant Effect tolerated_-_low_confidence(ENST00000284384); tolerated(ENST00000578063, ENST00000413366)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000578063, ENST00000413366, ENST00000284384)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers;Genic enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
PRKCA protein kinase C, alpha 17q24.2 10(9/0/1)

SNPs in LD with rs57178647 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx