SNP Report
Basic Info
| Name | rs564585 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 15:78593885 - 78593885(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | A | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.444489 | ||
| Annotation | downstream_gene_variant; upstream_gene_variant; 3_prime_UTR_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000559576, ENST00000326828, ENST00000394802, ENST00000559554); upstream_gene_variant(ENST00000567141); 3_prime_UTR_variant(ENST00000299565); intron_variant(ENST00000348639, ENST00000559002, ENST00000559658); NMD_transcript_variant(ENST00000559658); non_coding_transcript_variant(ENST00000559002) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000326828, ENST00000559658, ENST00000348639) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000326828, ENST00000559658, ENST00000348639) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Strong transcription | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| CHRNA3 | cholinergic receptor, nicotinic alpha 3 | 15q24 | 1(0/1/0) |
| CHRNA5 | cholinergic receptor, nicotinic alpha 5 | 15q24 | 2(1/1/0) |
SNPs in LD with rs564585 (count: 0)
SNP related eQTL (count: 1)