PTSDgene database

SNP Report

Basic Info
Name rs514743 dbSNP Ensembl
Location 15:78591885 - 78591885(+)
Variant Seq A
Ancestral Allele A
Ref Seq T
Minor Allele Frequence 0.241214
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant
Variant Effect downstream_gene_variant(ENST00000559658, ENST00000326828, ENST00000348639, ENST00000559002); upstream_gene_variant(ENST00000567141); intron_variant(ENST00000394802, ENST00000559576, ENST00000299565, ENST00000559554)
SIFT Annotation tolerated_-_low_confidence; deleterious_-_low_confidence; tolerated
SIFT Variant Effect tolerated_-_low_confidence(ENST00000348639); deleterious_-_low_confidence(ENST00000348639); tolerated(ENST00000299565)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000348639, ENST00000299565)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CHRNA3 cholinergic receptor, nicotinic alpha 3 15q24 1(0/1/0)
CHRNA5 cholinergic receptor, nicotinic alpha 5 15q24 2(1/1/0)

SNPs in LD with rs514743 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx