PTSDgene database

SNP Report

Basic Info
Name rs4987059 dbSNP Ensembl
Location 11:636433 - 636433(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.0421326
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000528733, ENST00000176183)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000176183)
PolyPhen Annotation unknown
PolyPhen Variant Effect unknown(ENST00000176183)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Flanking Bivalent TSS/Enh;Bivalent Enhancer;Genic enhancers;Enhancers;Bivalent/Poised TSS;Strong transcription;Weak transcription
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Nievergelt, C. M.,2015 PTSD In 2179 MRS subjects of European descent: P-value=0.10. In 2179 MRS subjects of European descent: P-value=0.10. No significant result. No significant result. Non-significant
G*E study related association result (count: 1)
Reference Phenotype Environment Statistical Values Author Comments Marker's Category
Nievergelt, C. M.,2015 PTSD Childhood trauma In 2179 MRS subjects of European descent, gene and childhood...... In 2179 MRS subjects of European descent, gene and childhood trauma interaction: P-value<0.05. More... It showed a non-significant interaction effect with childhoo...... It showed a non-significant interaction effect with childhood trauma on PTSD. More... Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD4 dopamine receptor D4 11p15.5 7(2/5/0)

SNPs in LD with rs4987059 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx