SNP Report
Name | rs450378 dbSNP Ensembl | ||
---|---|---|---|
Location | 7:51941038 - 51941038(+) | ||
Variant Seq | T | ||
Ancestral Allele | C | ||
Ref Seq | C | ||
Minor Allele Frequence | 0.119209 | ||
Annotation | downstream_gene_variant | ||
SIFT Annotation | deleterious_-_low_confidence; tolerated | ||
SIFT Variant Effect | deleterious_-_low_confidence(ENST00000395540); tolerated(ENST00000632460, ENST00000265136, ENST00000441453, ENST00000395542) | ||
PolyPhen Annotation | benign; possibly_damaging | ||
PolyPhen Variant Effect | benign(ENST00000441453); possibly_damaging(ENST00000632460, ENST00000395540, ENST00000265136, ENST00000395542) | ||
rSNP? | No Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Inactive region | ||
No. of Marker's Association Results | 2 (Positive: 0; Negative: 1; Trend: 1) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.