SNP Report
Name | rs4290270 dbSNP Ensembl | ||
---|---|---|---|
Location | 12:72022455 - 72022455(+) | ||
Variant Seq | T | ||
Ancestral Allele | A | ||
Ref Seq | A | ||
Minor Allele Frequence | 0.48722 | ||
Annotation | synonymous_variant | ||
Variant Effect | synonymous_variant(ENST00000333850) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000333850) | ||
PolyPhen Annotation | benign | ||
PolyPhen Variant Effect | benign(ENST00000333850) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription;Enhancers | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.