SNP Report
Name | rs3859123 dbSNP Ensembl | ||
---|---|---|---|
Location | 16:9977038 - 9977038(+) | ||
Variant Seq | G | ||
Ancestral Allele | G | ||
Ref Seq | A | ||
Minor Allele Frequence | 0.383586 | ||
Annotation | intron_variant; non_coding_transcript_variant | ||
Variant Effect | intron_variant(ENST00000562109, ENST00000396573, ENST00000330684, ENST00000566670, ENST00000566683, ENST00000568247); non_coding_transcript_variant(ENST00000566670, ENST00000566683, ENST00000568247) | ||
SIFT Annotation | tolerated | ||
SIFT Variant Effect | tolerated(ENST00000396573, ENST00000330684, ENST00000396575, ENST00000562109, ENST00000535259) | ||
PolyPhen Annotation | benign; probably_damaging | ||
PolyPhen Variant Effect | benign(ENST00000396573, ENST00000330684, ENST00000562109, ENST00000535259); probably_damaging(ENST00000396575) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription;Enhancers | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.