PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs38498 dbSNP Ensembl
Location	7:30587132 - 30587132(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	A
Minor Allele Frequence	0.186102
Annotation	upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	upstream_gene_variant(ENST00000454922); intron_variant(ENST00000582549, ENST00000580440, ENST00000578994, ENST00000426529, ENST00000584199, ENST00000579174, ENST00000583664, ENST00000584372, ENST00000581794, ENST00000581665, ENST00000582733); non_coding_transcript_variant(ENST00000582549, ENST00000580440, ENST00000578994, ENST00000426529, ENST00000584199, ENST00000579174, ENST00000583664, ENST00000584372, ENST00000581794, ENST00000581665, ENST00000582733)
SIFT Annotation	deleterious_-_low_confidence; deleterious
SIFT Variant Effect	deleterious_-_low_confidence(ENST00000454308, ENST00000627489); deleterious(ENST00000389266, LRG_243t1)
PolyPhen Annotation	unknown; possibly_damaging
PolyPhen Variant Effect	unknown(ENST00000454308, ENST00000627489); possibly_damaging(ENST00000389266, LRG_243t1)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	TF binding region;Chromatin interactive region
Chromatin State	Weak transcription;Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
GARS	glycyl-tRNA synthetase	7p15	Mapped by LD-proxy, rSNP target

SNPs in LD with rs38498 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CAT	Yes	Adipose Subcutaneous	cis	GTEx