PTSDgene database

SNP Report

Basic Info
Name rs38498 dbSNP Ensembl
Location 7:30587132 - 30587132(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.186102
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000454922); intron_variant(ENST00000582549, ENST00000580440, ENST00000578994, ENST00000426529, ENST00000584199, ENST00000579174, ENST00000583664, ENST00000584372, ENST00000581794, ENST00000581665, ENST00000582733); non_coding_transcript_variant(ENST00000582549, ENST00000580440, ENST00000578994, ENST00000426529, ENST00000584199, ENST00000579174, ENST00000583664, ENST00000584372, ENST00000581794, ENST00000581665, ENST00000582733)
SIFT Annotation deleterious_-_low_confidence; deleterious
SIFT Variant Effect deleterious_-_low_confidence(ENST00000454308, ENST00000627489); deleterious(ENST00000389266, LRG_243t1)
PolyPhen Annotation unknown; possibly_damaging
PolyPhen Variant Effect unknown(ENST00000454308, ENST00000627489); possibly_damaging(ENST00000389266, LRG_243t1)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GARS glycyl-tRNA synthetase 7p15 Mapped by LD-proxy, rSNP target

SNPs in LD with rs38498 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CAT Yes Adipose Subcutaneous cis GTEx