PTSDgene database

SNP Report

Basic Info
Name rs38473 dbSNP Ensembl
Location 7:30553940 - 30553940(+)
Variant Seq T
Ancestral Allele T
Ref Seq C
Minor Allele Frequence 0.204473
Annotation downstream_gene_variant; non_coding_transcript_exon_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000584621, ENST00000579437); non_coding_transcript_exon_variant(ENST00000355837); upstream_gene_variant(ENST00000582838, ENST00000625565, ENST00000440438, ENST00000598361); intron_variant(ENST00000577889, ENST00000631229, ENST00000434399, ENST00000626902, ENST00000578293, ENST00000426529, ENST00000578245, ENST00000580902, ENST00000578572); non_coding_transcript_variant(ENST00000577889, ENST00000631229, ENST00000434399, ENST00000626902, ENST00000578293, ENST00000355837, ENST00000426529, ENST00000578245, ENST00000580902, ENST00000578572)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000275428, ENST00000426081, ENST00000409436, ENST00000598361)
PolyPhen Annotation benign; probably_damaging
PolyPhen Variant Effect benign(ENST00000409436); probably_damaging(ENST00000275428, ENST00000426081, ENST00000598361)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region;lncRNA
Chromatin State Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
GGCT gamma-glutamylcyclotransferase 7p15-p14 rSNP target

SNPs in LD with rs38473 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CAT Yes Adipose Subcutaneous cis GTEx