PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs38473 dbSNP Ensembl
Location	7:30553940 - 30553940(+)
Variant Seq	T
Ancestral Allele	T
Ref Seq	C
Minor Allele Frequence	0.204473
Annotation	downstream_gene_variant; non_coding_transcript_exon_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000584621, ENST00000579437); non_coding_transcript_exon_variant(ENST00000355837); upstream_gene_variant(ENST00000582838, ENST00000625565, ENST00000440438, ENST00000598361); intron_variant(ENST00000577889, ENST00000631229, ENST00000434399, ENST00000626902, ENST00000578293, ENST00000426529, ENST00000578245, ENST00000580902, ENST00000578572); non_coding_transcript_variant(ENST00000577889, ENST00000631229, ENST00000434399, ENST00000626902, ENST00000578293, ENST00000355837, ENST00000426529, ENST00000578245, ENST00000580902, ENST00000578572)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000275428, ENST00000426081, ENST00000409436, ENST00000598361)
PolyPhen Annotation	benign; probably_damaging
PolyPhen Variant Effect	benign(ENST00000409436); probably_damaging(ENST00000275428, ENST00000426081, ENST00000598361)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region;lncRNA
Chromatin State	Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
GGCT	gamma-glutamylcyclotransferase	7p15-p14	rSNP target

SNPs in LD with rs38473 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CAT	Yes	Adipose Subcutaneous	cis	GTEx