PTSDgene database

SNP Report

Basic Info
Name rs34488708 dbSNP Ensembl
Location 17:66481330 - 66481330(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.170927
Annotation intron_variant; NMD_transcript_variant
Variant Effect intron_variant(ENST00000413366, ENST00000284384, ENST00000578063); NMD_transcript_variant(ENST00000284384, ENST00000578063)
SIFT Annotation tolerated_-_low_confidence; tolerated
SIFT Variant Effect tolerated_-_low_confidence(ENST00000284384); tolerated(ENST00000578063, ENST00000413366)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000578063, ENST00000413366, ENST00000284384)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers;Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
PRKCA protein kinase C, alpha 17q24.2 10(9/0/1)

SNPs in LD with rs34488708 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx