PTSDgene database

SNP Report

Basic Info
Name rs324416 dbSNP Ensembl
Location 1:46399715 - 46399715(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.295927
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000493735, ENST00000468718, ENST00000243167); non_coding_transcript_variant(ENST00000493735, ENST00000468718)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000243167)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000243167)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers;Flanking Active TSS
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
FAAH fatty acid amide hydrolase 1p35-p34 8(3/5/0)

SNPs in LD with rs324416 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx