SNP Report
Basic Info
| Name | rs2853550 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 2:112829544 - 112829544(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | G | ||
| Ref Seq | A | ||
| Minor Allele Frequence | 0.202476 | ||
| Annotation | downstream_gene_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000418817, ENST00000491056, ENST00000416750, ENST00000263341, ENST00000487639, ENST00000432018, ENST00000496280) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000263341) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000263341) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Weak transcription;Strong transcription;Genic enhancers;Enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Hovhannisyan, L.,2017 | PTSD diagnosis | A carriage: OR=0.71, P-value=0.17, corrected P-value=0.85 A carriage: OR=0.71, P-value=0.17, corrected P-value=0.85 | No association between this SNP and PTSD was found. No association between this SNP and PTSD was found. | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| IL1B | interleukin 1 beta | 2q14 | 1(1/0/0) |
SNPs in LD with rs2853550 (count: 4)
Literature-origin SNPs (count: 0)
LD-proxies (count: 4)
SNP related eQTL (count: 1)