PTSDgene database

SNP Report

Basic Info
Name rs276651 dbSNP Ensembl
Location 8:72225852 - 72225852(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.150958
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000503430); non_coding_transcript_variant(ENST00000503430)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000262209)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000262209)
rSNP? No Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Inactive region
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Solovieff, N.,2014 PTSD severity P-value=0.089 P-value=0.089 Achieved nominal levels of significance with PTSD severity, ...... Achieved nominal levels of significance with PTSD severity, although was not significant after correction for multiple testing More... Non-significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
FKBP5 FK506 binding protein 5 6p21.31 25(12/13/0)

SNPs in LD with rs276651 (count: 16)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 16)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx