PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs2619520 dbSNP Ensembl
Location	6:15655924 - 15655924(+)
Variant Seq	A
Ancestral Allele	A
Ref Seq	C
Minor Allele Frequence	0.112819
Annotation	intron_variant; NMD_transcript_variant
Variant Effect	intron_variant(LRG_588t2, ENST00000515875, ENST00000344537, LRG_588t1, ENST00000510395, ENST00000355917, ENST00000338950, ENST00000511762, ENST00000513680, ENST00000622898, ENST00000506844); NMD_transcript_variant(ENST00000515875, ENST00000510395, ENST00000513680, ENST00000506844)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000344537, ENST00000355917, LRG_588t1, ENST00000622898, ENST00000515875, ENST00000511762, ENST00000338950, LRG_588t2)
PolyPhen Annotation	benign; possibly_damaging; probably_damaging
PolyPhen Variant Effect	benign(ENST00000355917, ENST00000515875); possibly_damaging(ENST00000511762); probably_damaging(ENST00000344537, LRG_588t1, ENST00000622898, ENST00000338950, LRG_588t2)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
DTNBP1	dystrobrevin binding protein 1	6p22.3	5(2/3/0)

SNPs in LD with rs2619520 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1	Yes	Adipose Subcutaneous	cis	GTEx