SNP Report
Basic Info
| Name | rs2519154 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 9:133647153 - 133647153(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | T | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.433107 | ||
| Annotation | downstream_gene_variant; intron_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000263611); intron_variant(ENST00000393056) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000393056) | ||
| PolyPhen Annotation | probably_damaging | ||
| PolyPhen Variant Effect | probably_damaging(ENST00000393056) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Enhancers;Weak transcription;Bivalent Enhancer | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Nelson, E. C.,2014 | PTSD | P-value=0.016, OR=0.84 P-value=0.016, OR=0.84 | Although the association of this SNP is of considerably lowe...... Although the association of this SNP is of considerably lower magnitude, it is interesting to note. More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| DBH | dopamine beta-hydroxylase (dopamine beta-monooxygenase) | 9q34 | 4(0/4/0) |
SNPs in LD with rs2519154 (count: 0)
SNP related eQTL (count: 1)