PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs2456019 dbSNP Ensembl
Location	15:78576147 - 78576147(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	T
Minor Allele Frequence	0.239816
Annotation	upstream_gene_variant; intron_variant
Variant Effect	upstream_gene_variant(ENST00000394802); intron_variant(ENST00000299565, ENST00000559554)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000044462, ENST00000413382, ENST00000559154, ENST00000559948, ENST00000559365, ENST00000560217, ENST00000559082, ENST00000560737, ENST00000558094, ENST00000558281, ENST00000559437, ENST00000559146)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000044462, ENST00000413382, ENST00000559154, ENST00000559948, ENST00000559365, ENST00000560217, ENST00000559082, ENST00000560737, ENST00000558094, ENST00000558281, ENST00000559437, ENST00000559146)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Weak transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
PSMA4	proteasome subunit alpha 4	15q24.1	Mapped by LD-proxy, rSNP target
CHRNA5	cholinergic receptor, nicotinic alpha 5	15q24	2(1/1/0)

SNPs in LD with rs2456019 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-259G18.3	No	Adipose Subcutaneous	cis	GTEx