SNP Report
Basic Info
| Name | rs2424942 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 20:33079402 - 33079402(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | T | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.367412 | ||
| Annotation | upstream_gene_variant | ||
| Variant Effect | upstream_gene_variant(ENST00000375483, ENST00000445356) | ||
| SIFT Annotation | deleterious_-_low_confidence | ||
| SIFT Variant Effect | deleterious_-_low_confidence(ENST00000375483) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000375483) | ||
| rSNP? | No Link in rVarBase | ||
| Related Regulatory Elements | N.A. | ||
| Chromatin State | N.A. | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Amstadter, A. B.,2011 | Acute UCLA PTSD-RI score | B=-1.00, t=-0.40, Empirical P-value=0.78 B=-1.00, t=-0.40, Empirical P-value=0.78 | No significant result. No significant result. | Non-significant |
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| CRHR1 | corticotropin releasing hormone receptor 1 | 17q21.31 | 12(6/6/0) |
| BPIFB4 | BPI fold containing family B member 4 | 20q11.21 | Mapped by Literature SNP, Mapped by LD-proxy |
SNPs in LD with rs2424942 (count: 8)
Literature-origin SNPs (count: 0)
LD-proxies (count: 8)
SNP related eQTL (count: 1)