PTSDgene database

SNP Report

Basic Info
Name rs2424942 dbSNP Ensembl
Location 20:33079402 - 33079402(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.367412
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000375483, ENST00000445356)
SIFT Annotation deleterious_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000375483)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000375483)
rSNP? No Link in rVarBase
Related Regulatory Elements N.A.
Chromatin State N.A.
No. of Marker's Association Results 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Amstadter, A. B.,2011 Acute UCLA PTSD-RI score B=-1.00, t=-0.40, Empirical P-value=0.78 B=-1.00, t=-0.40, Empirical P-value=0.78 No significant result. No significant result. Non-significant


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CRHR1 corticotropin releasing hormone receptor 1 17q21.31 12(6/6/0)
BPIFB4 BPI fold containing family B member 4 20q11.21 Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs2424942 (count: 8)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 8)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx