SNP Report
Basic Info
| Name | rs2341744 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 1:162299232 - 162299232(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.452476 | ||
| Annotation | intron_variant; NMD_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000430120, ENST00000361897, ENST00000530878); NMD_transcript_variant(ENST00000430120) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000361897) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000361897) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Enhancers | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Lawford, B. R.,2013 | PTSD | Allele frequencies: X2=0.976, P-value=0.323, OR=...... Allele frequencies: X2=0.976, P-value=0.323, OR=1.20, 95%CI(0.57-1.21). More... | No significant signals was observed about this SNP. No significant signals was observed about this SNP. | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| NOS1AP | nitric oxide synthase 1 adaptor protein | 1q23.3 | 3(3/0/0) |
SNPs in LD with rs2341744 (count: 11)
Literature-origin SNPs (count: 1)
LD-proxies (count: 10)
SNP related eQTL (count: 1)