SNP Report

Basic Info
Name |
rs2284216
dbSNP
Ensembl
|
Location |
7:30672345 - 30672345(+) |
Variant Seq |
T |
Ancestral Allele |
G |
Ref Seq |
G |
Minor Allele Frequence |
0.167532 |
Annotation |
intron_variant; NMD_transcript_variant
|
Variant Effect |
intron_variant(ENST00000452278, ENST00000471646, ENST00000348438, ENST00000341843, ENST00000506074); NMD_transcript_variant(ENST00000452278)
|
SIFT Annotation |
deleterious
|
SIFT Variant Effect |
deleterious(ENST00000471646, ENST00000348438, ENST00000341843, ENST00000506074)
|
PolyPhen Annotation |
benign
|
PolyPhen Variant Effect |
benign(ENST00000471646, ENST00000348438, ENST00000341843, ENST00000506074)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Weak transcription;Enhancers
|
No. of Marker's Association Results |
1 (Positive: 1; Negative: 0; Trend: 0) |
Source |
Literature |

SNP related association results

SNP related genes (count: 1)

SNPs in LD with rs2284216 (count: 0)

SNP related eQTL (count: 1)